As an interdisciplinary group, we seek to publish in journals that span the broad readership of the problems we address. Additionally, we support open access publishing practices and try to post our papers on pre-print servers, like biorxiv. For the most up to date list of publications from the lab, please visit here.

Leveraging an endometrial proteomic and single cell transcriptomics pipeline reveals menstrual cycle and endometriosis-associated molecular profiles

Lauren Baugh*, Brittany A. Goods*, Juan S. Gnecco, Yunbeen Bae, Michael Retchin, Constantine N. Tzouanas, Megan Loring, Keith Issacson, Alex K. Shalek, Douglas Lauffenburger, and Linda Griffith

medRxiv

November 4, 2022

Pubmed doi

Diverse antiviral IgG effector activities are predicted by unique biophysical antibody features

Cheng HD, Dowell KG, Bailey-Kellogg C, Goods BA, Love JC, Ferrari G, Alter G, Gach J, Forthal DN, Lewis GK, Greene K, Gao H, Montefiori DC, Ackerman ME

Retrovirology

November 4, 2022

Pubmed doi

Single-cell transcriptomics of staged oocytes and somatic cells reveal novel regulators of follicle activation

Chen YY, Russo DD, Drake RS, Duncan FE, Shalek AK, Goods BA+,*, Woodruff TK*.

Reproduction

November 4, 2022

Pubmed doi

Cellular and transcriptional diversity over the course of human lactation.

Sarah K Nyquist, Patricia Gao, Tessa K. J. Haining, Michael R Retchin, Yarden Golan Maor, Riley S Drake, Kellie Kolb, Benjamin E Mead, Nadav Ahituv, Micaela E Martinez, Bonnie Berger, Alex K Shalek, Brittany A Goods.

PNAS

November 13, 2021

doi

Tissue engineered organoid co-culture model of the cycling human endometrium in a fully-defined synthetic extracellular matrix.

Juan S. Gnecco, Alexander Brown, Kira Buttrey, Clara Ives, Britt Goods, Lauren Baugh, Victor Hernandez-Gordillo, Megan Loring, Keith Issacson, Linda G. Griffith.

bioRxiv

September 30, 2021

Pubmed

Vitrification preserves murine ovarian follicular cell transcriptome in a 3D encapsulated in vitro follicle growth system.

Wang Y, Russo DD, Pattarawat P, Zhang Q, Zelinski MB, Shalek AK, Goods BA, Xiao S.

Biol Reprod

September 21, 2021

Pubmed

Divergent Functions of Tissue-Resident and Blood-Derived Macrophages in the Hemorrhagic Brain.

Chang CF, Goods BA, Askenase MH, Beatty HE, Osherov A, DeLong JH, Hammond MD, Massey J, Landreneau M, Love JC, Sansing LH.

Stroke

April 12, 2021

Pubmed

Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu

Goods BA*, Askenase MH*, Markarian E, Beatty HE, Drake RS, Fleming I, DeLong JH, Philip NH, Matouk CC, Awad IA, Zuccarello M, Hanley DF, Love JC, Shalek AK, Sansing LH; ICHseq Investigators.

JCI Insight

March 22, 2021

Pubmed

Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage

Askenase MH*, Goods BA*, Beatty HE, Steinschneider AF, Velazquez SE, Osherov A, Landreneau MJ, Carroll SL, Tran TB, Avram VS, Drake RS, Gatter GJ, Massey JA, Karuppagounder SS, Ratan RR, Matouk CC, Sheth KN, Ziai WC, Parry-Jones AR, Awad IA, Zuccarello M, Thompson RE, Dawson J, Hanley DF, Love JC, Shalek AK, Sansing LH; MISTIE III Consortium; ICHseq investigators; ICHseq Investigators MISTIE III Investigators

Sci Immunol

February 19, 2021

Pubmed

Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.

Menon M, Mohammadi S, Davila-Velderrain J, Goods BA, Cadwell TD, Xing Y, Stemmer-Rachamimov A, Shalek AK, Love JC, Kellis M, Hafler BP.

Nature Communications

October 25, 2019

Pubmed
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