As an interdisciplinary group, we seek to publish in journals that span the broad readership of the problems we address. Additionally, we support open access publishing practices and try to post our papers on pre-print servers, like biorxiv. For the most up to date list of publications from the lab, please visit here.

Cellular and transcriptional diversity over the course of human lactation.

Sarah K Nyquist, Patricia Gao, Tessa K. J. Haining, Michael R Retchin, Yarden Golan Maor, Riley S Drake, Kellie Kolb, Benjamin E Mead, Nadav Ahituv, Micaela E Martinez, Bonnie Berger, Alex K Shalek, Brittany A Goods.


November 13, 2021


Tissue engineered organoid co-culture model of the cycling human endometrium in a fully-defined synthetic extracellular matrix.

Juan S. Gnecco, Alexander Brown, Kira Buttrey, Clara Ives, Britt Goods, Lauren Baugh, Victor Hernandez-Gordillo, Megan Loring, Keith Issacson, Linda G. Griffith.


September 30, 2021


Vitrification preserves murine ovarian follicular cell transcriptome in a 3D encapsulated in vitro follicle growth system.

Wang Y, Russo DD, Pattarawat P, Zhang Q, Zelinski MB, Shalek AK, Goods BA, Xiao S.

Biol Reprod

September 21, 2021


Divergent Functions of Tissue-Resident and Blood-Derived Macrophages in the Hemorrhagic Brain.

Chang CF, Goods BA, Askenase MH, Beatty HE, Osherov A, DeLong JH, Hammond MD, Massey J, Landreneau M, Love JC, Sansing LH.


April 12, 2021


Leukocyte dynamics after intracerebral hemorrhage in a living patient reveal rapid adaptations to tissue milieu

Goods BA*, Askenase MH*, Markarian E, Beatty HE, Drake RS, Fleming I, DeLong JH, Philip NH, Matouk CC, Awad IA, Zuccarello M, Hanley DF, Love JC, Shalek AK, Sansing LH; ICHseq Investigators.

JCI Insight

March 22, 2021


Longitudinal transcriptomics define the stages of myeloid activation in the living human brain after intracerebral hemorrhage

Askenase MH*, Goods BA*, Beatty HE, Steinschneider AF, Velazquez SE, Osherov A, Landreneau MJ, Carroll SL, Tran TB, Avram VS, Drake RS, Gatter GJ, Massey JA, Karuppagounder SS, Ratan RR, Matouk CC, Sheth KN, Ziai WC, Parry-Jones AR, Awad IA, Zuccarello M, Thompson RE, Dawson J, Hanley DF, Love JC, Shalek AK, Sansing LH; MISTIE III Consortium; ICHseq investigators; ICHseq Investigators MISTIE III Investigators

Sci Immunol

February 19, 2021


Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration.

Menon M, Mohammadi S, Davila-Velderrain J, Goods BA, Cadwell TD, Xing Y, Stemmer-Rachamimov A, Shalek AK, Love JC, Kellis M, Hafler BP.

Nature Communications

October 25, 2019


Profiling human antibody responses by integrated single-cell analysis.

Ogunniyi A, Thomas BA, Politano TJ, Varadarajan N, Landais E, Poignard P, Walker BD, Kwon DS, Love JC.


May 24, 2019

Blood handling and leukocyte isolation methods impact the global transcriptome of immune cells.

Goods BA+, Vahey J, Steinschneider A, Askenase M, Sansing LH, Love JC.

BMC Immunol

October 30, 2018


Erythrocyte efferocytosis modulates macrophages towards recovery after intracerebral hemorrhage.

Chang CG, Goods BA, Askenase MH, Hammond MD, Renfroe SC, Steinschneider AF, Landreneau MJ, Ai Y, Mack M, Sheth K, Greer D, Huttner A, Coman D, Fahmeed Hyder DS, Ghosh S, Rothlin C, Love JC, Sansing LH.

J Clin Invest

December 18, 2017